biodbs 0.2.0¶

Released: 2026-02-08

0.2.0 was a feature release that added knowledge graph support, expanded database integrations, and improved analysis and documentation coverage.

Highlights¶

Added the knowledge graph module and related tests.
Added UniProt, Reactome, Disease Ontology, NCBI Datasets, and EnrichR functionality.
Added Reactome pathway analysis and API participant/event helpers.
Added automatic ID translation for ORA functions.
Added rate limiting and retry utilities for API fetchers.
Improved fetched data representations and nested dictionary flattening.
Added graph dependency extras and removed the old requirements.txt flow.
Added documentation site support with MkDocs styling.

This release expanded API examples and class documentation across FDA, KEGG, QuickGO, fetchers, and pathway cache utilities.

pip install --upgrade biodbs==0.2.0

This was an early feature release; users on older builds should review the updated fetch, analysis, translation, and graph documentation.